Sediment–water dissolved inorganic nitrogen fluxes were measured monthly between November 1997 and January 1999 at two sites on the continental shelf in the Gulf of Lions. Exchanges of ammonium, nitrate and nitrite were measured using whole core incubations performed in the laboratory at in situ temperature and in the dark. Stations were located on the shelf and near the shelf break. Nitrate release represented the major part of total dissolved inorganic nitrogen fluxes (52–98%). At station Sofi, nitrate flux doubled from winter–early spring to August (4 to 10 μmol m–2 h–1). At station R, a large increase (2 to 14 μmol m–2 h–1) was recorded between December 1997 and January 1998, after which flux tended to decrease. Ammonium flux was generally directed out of the sediment, and was lower at station Sofi than at station R. Nitrite flux was always less than 1 μmol m–2 h–1. A large part of the temporal variability observed at station R could be attributed to the input of organic matter associated with the discharge of the Rhône River. On the contrary, the influence of the Rhône River is limited at station Sofi, and the spring phytoplankton bloom deposition was probably the major cause of temporal variability. Comparisons of total fluxes with diffusive fluxes suggested a high nitrification rate in the upper centimetre of the sediment. Annual dissolved inorganic nitrogen release from sediments, equivalent to 20–34% of the Rhône River inputs, may contribute 4–8% of the requirements for primary production in the Gulf of Lions.

A biogeochemical box model describing the south-west lagoon of New-Caledonia was developed in order to simulate the seasonal cycle of carbon and nitrogen. We used fluxes generated by a 3D hydrodynamic model to simulate horizontal exchanges between boxes and added freshwater influxes as nitrogen sources from the land. Average residence time proved to be less than 11 days for the lagoon as a whole. Standard simulations showed baseline values of chlorophyll a between 0.2 and 0.4 μg·L–1. Influences of freshwater influxes proved to be significant (increases up to 1 μg·L–1) only in shallow areas protected from wind exposure and during short periods of heavy rainfall (tropical depressions). Tropical climatic events have reduced impact in space and time and long-term simulations over decades with increased nutrient inputs did not show any significant process of eutrophication. Hydrodynamics seemed to be one of the major control factors with respect to organic matter cycling in the lagoon.

Benthic oxygen uptake and nutrient releases of N, P and Si were measured weekly at 2 sites in South San Francisco Bay around the 1996 spring bloom. Exchanges across the sediment-water interface were estimated from whole core incubations performed in the laboratory at in situ temperature and in dark. Fluxes changed significantly on a weekly time scale. Over a period of 15 wk the fluxes of dissolved inorganic N, P and Si ranged from -40 to +200, 0 to 13 and from 30 to 400 µmol m-2 h-1 respectively. Sediment oxygen demand increased from 10 before to 64 mg O2 m-2 h-1 just after the bloom period. During the bloom, nutrient fluxes represented about 20, 16 and 9% of the Si, P and N requirements for primary production. Before and after the bloom period, Si fluxes contributed up to 30 and >100% of this requirement and P and N fluxes up to 15 and 50% respectively. Simple empirical models explain most of the spatial-temporal variability of benthic fluxes of Si, P and NH4 (but not NO3) from 3 predictor variables: sediment porosity, nutrient concentration in bottom waters and chlorophyll content of surficial sediments. These models show that algal blooms influence benthic-pelagic nutrient exchange through 2 processes: (1) depletion of nutrients from the water column (which enhances gradient-driven transports across the sediment-water interface) and (2) sedimentation of labile phytodetritus (which promotes remineralization in or on the surficial sediments). Rates and patterns of nutrient cycling were very different at the shallow and deep study sites, illustrating the challenge of extrapolating measurements of coupled algae-nutrient dynamics to whole ecosystems.

We present results of an intensive sampling program designed to measure weekly changes in ecosystem respiration (oxygen consumption in the water column and sediments) around the 1996 spring bloom in South San Francisco Bay, California, USA. Measurements were made at a shallow site (2 m, where mean photic depth was 60% of the water column height) and a deep site (15 m, mean photic depth was only 20% of the water column). We also estimated phytoplankton primary production weekly at both sites to develop estimates of net oxygen flux as the sum of pelagic production (PP), pelagic respiration (PR) and benthic respiration (BR). Over the 14 wk period from February 5 to May 14, PP ranged from 2 to 210, PR from 9 to 289, and BR from 0.1 to 48 mmol O<-H>2<-H> m-2 d-1, illustrating large variability of estuarine oxygen fluxes at the weekly time scale. Pelagic production exceeded total respiration at the shallow site, but not at the deep site, demonstrating that the shallow domains are net autotrophic but the deep domains are net heterotrophic, even during the period of the spring bloom. If we take into account the potential primary production by benthic microalgae, the estuary as a whole is net autotrophic during spring, net heterotrophic during the nonbloom seasons, and has a balanced net metabolism over a full annual period. The seasonal shift from net autotrophy to heterotrophy during the transition from spring to summer was accompanied by a large shift from dominance by pelagic respiration to dominance by benthic respiration. This suggests that changes in net ecosystem metabolism can reflect changes in the pathways of energy flow in shallow coastal ecosystems

Measurements of oxygen fluxes at the water-sediment interface (transparent and opaque enclosures) were made on bare sediments inhabited by microphytes on the one hand, and on sediments diversely colonized by macrophytes (macroalgae and seagrasses) on the other hand. Five stations, typical of different biotopes of a Mediterranean shallow lagoon were studied from May to July 1993 in order to observe an anoxic event which usually occurs at that time of the year. Average diurnal respiration of benthic communities ranged from 40 mg (or 1.25 mmol) O2 m2 h−1 in bare sediments (31 % of the lagoon area) to 76 mg (or 2.37 mmol) O2 m−2 h−1 in sediments with a medium coverage of macroalgae (37 % of the total area) and, finally, to 100 mg (or 3.12 mmol) O2 m−2h−1 in the denser macrophytic area (32 % of the total area). The highest diurnal gross production was observed in the zone colonized by macroalgae and seagrasses, and especially in corridors between shellfish-cultivation tables (300 mg O2 m−2 h−1, or 9.37 mmol O2m−2 h−1, equivalent to 113 mg C m−2 h−1). Overall, during this period, net bottom oxygen production was close to nil in ca. 30 %, and positive in 70 % of the lagoon area. The average net oxygen production for the whole lagoon in summer is thus in the order of 100 mg O2 m−2h−1. In 1993, at the end of July, an anoxic event was avoided due to a period of strong wind.