In view of increasing environmental awareness and biodiversity conservation, understanding the main forcing mechanism driving biogeochemical cycles in coral reefs and lagoon coastal areas is a priority. La Niña events cause unbalanced situations in the Equatorial Pacific and result in enhanced precipitation in South West Pacific coastal areas. We investigated the impact of heavy rainfalls during the 2008 La Niña event on the New Caledonia lagoon using a 3D coupled on-line hydrodynamic-biogeochemical model. Simulations and data showed that the whole lagoon was impacted by river inputs and stronger hydrodynamics, enhancing chlorophyll-a concentration by a factor between 1.7 and 1.9. The coupled model provided new insights into plume transport, highlighting that eastern plumes can be advected northwards or can reach the South West Lagoon, depending on the balance between regional, tide-induced, and wind-induced surface currents. It also provided a synoptic view of lagoon biogeochemical-hydrodynamic response, when remote sensing data are not available due to cloud coverage.

We use a high-resolution numerical model toanalyze the hydrodynamical exchange processes of the CienfuegosBay with the Caribbean Sea. Results show that freshwaterinputs and wind are the main factors controlling the waterexchange in the bay. Nine simulation case studies with threewind conditions and three freshwater inputs were carried out.The main conclusion is that the Cienfuegos Bay system has aslow exchange rate, with an average flushing time of 39 daysduring the rainy period and 50 days during the dry one, forthe most probable wind direction. Two new temporary scalesfor Cienfuegos Bay are discussed: the local e-flushing time andthe flushing lag. The results obtained for these new variablesvalidate the slow exchange capacity of the bay.

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The major part of the New Caledonia (NC) lagoon was classified as UNESCO Natural Site of Humanity Patrimony. Indeed, 22 175 km(2) of tropical coral lagoon area exhibit high biodiversity. The NC lagoon is semi enclosed and connected to the Coral Sea through a barrier reef segmented by narrow passes. The environment is oligotrophic, due to important flush during trade winds events, and bathymetry is highly variable. In order to predict eutrophication events, we used an extension of a 3D coupled physical-biogeochemical model recently developed on NC south western lagoon. The model is based on the Nitrogen and Carbon cycles, relating the variable stoechiometry of the elements in each biological compartment. The ecological model was developed to include an explicit description of the microbial loop. The resulting coupled model, forced by tide, wind, light, temperature and freshwater inputs, was used to calculate phytoplankton biomass, bacterial production, dissolved organic matter concentrations and nutrient recycling. Here we present results issued from the 3D coupled model ECO3M_LAGOON (biogeochemical, LOPB-IRD) and MARS3D (regional physical model, IFREMER-IRD) describing spatial and temporal interactions between water motion and biology, on larger domain including reef barrier and water exchanges through ocean-lagoon interface. To validate physical processes in the lagoon we used in situ data collected during field cruise (ValHyBio 2008, La Nina episode). Surface chlorophyll concentrations are compared with water color data from ValHyBio cruise and satellite date (MODIS/MERIS) corrected from bathymetry effects.

Coral reef lagoons are under the growing influence of anthropogenic activities, leading to increasing loads of nutrients and various contaminants. Modelling approaches are a useful tool for studying such a complex coastal environment. In this study, we carried out the development of a three-dimensional coupled hydrodynamical-biogeochemical model of the south-west lagoon of New Caledonia. The biogeochemical model presented in Faure et al. (2006, 2010) was dynamically coupled with a hydrodynamical model (MARS3D) in order to study the short-term variability of the ecosystem. Two simulations (in winter and summer) were then performed from measured initial conditions using realistic wind and irradiance conditions and river inputs. Examinations of the biogeochemical response to these transient meteorological conditions were presented and compared with temporal field data corresponding to the considered periods. Results highlighted the ecosystem functioning, based on the balance of hydrodynamical and biogeochemical processes. Influence of urban and terrigeneous inputs were limited to the coastal zone. The model accurately reproduced the measured Chl.a and bacterial production, highlighting the improvement made on the biogeochemical model. However, the underestimation of some variables in model outputs, in particular nutrients, led us to focus on different inputs, such as sediment inputs which were not taken into account or properly estimated. Moreover, the role of boundary waters appeared crucial and suggested a calibration effort. Last, the final aim of our modelling study will help the development of a useful tool for studying the key processes of the ecosystem of the south-west lagoon of New Caledonia, as well as the examination of the biogeochemical response under different scenarios. (C) 2010 Elsevier Ltd. All rights reserved.

Considering the growing concern about the impact of anthropogenic inputs on coral reefs and coral reef lagoons, surprisingly little attention has been given to the relationship between those inputs and the trophic status of lagoon waters. The present paper describes the distribution of biogeochemical parameters in the coral reef lagoon of New Caledonia where environmental conditions allegedly range from pristine oligotrophic to anthropogenically influenced. The study objectives were to: (i) identify terrigeneous and anthropogenic inputs and propose a typology of lagoon waters, (ii) determine temporal variability of water biogeochemical parameters at time-scales ranging from hours to seasons. Combined ACP-cluster analyses revealed that over the 2000 km2 lagoon area around the city of Nouméa, "natural" terrigeneous versus oceanic influences affecting all stations only accounted for less than 20% of the spatial variability whereas 60% of that spatial variability could be attributed to significant eutrophication of a limited number of inshore stations. ACP analysis allowed to unambiguously discriminating between the natural trophic enrichment along the offshore-inshore gradient and anthropogenically induced eutrophication. High temporal variability in dissolved inorganic nutrients concentrations strongly hindered their use as indicators of environmental status. Due to longer turn over time, particulate organic material and more specifically chlorophyll a appeared as more reliable nonconservative tracer of trophic status. Results further provided evidence that ENSO occurrences might temporarily lower the trophic status of the New Caledonia lagoon. It is concluded that, due to such high frequency temporal variability, the use of biogeochemical parameters in environmental surveys require adapted sampling strategies, data management and environmental alert methods.

Is it possible to derive accurately Total Suspended Matter concentration or its proxy, turbidity, from remote sensing data in tropical coastal lagoon waters? To investigate this question, hyperspectral remote sensing reflectance, turbidity and chlorophyll pigment concentration were measured in three coral reef lagoons. The three sites enabled us to get data over very diverse environments: oligotrophic and sediment-poor waters in the southwest lagoon of New Caledonia, eutrophic waters in the Cienfuegos Bay (Cuba), and sediment-rich waters in the Laucala Bay (Fiji). In this paper, optical algorithms for turbidity are presented per site based on 113 stations in New Caledonia, 24 stations in Cuba and 56 stations in Fiji. Empirical algorithms are tested at satellite wavebands useful to coastal applications. Global algorithms are also derived for the merged data set (193 stations). The performances of global and local regression algorithms are compared. The best one-band algorithms on all the measurements are obtained at 681 nm using either a polynomial or a power model. The best two-band algorithms are obtained with R412/R620, R443/R670 and R510/R681. Two three-band algorithms based on Rrs620. Rrs681/Rrs412 and Rrs620. Rrs681/Rrs510 also give fair regression statistics. Finally, we propose a global algorithm based on one or three bands: turbidity is first calculated from Rrs681 and then, if < 1 FTU, it is recalculated using an algorithm based on Rrs620. Rrs681/Rrs412. On our data set, this algorithm is suitable for the 0.2-25 FTU turbidity range and for the three sites sampled (mean bias: 3.6 %, rms: 35%, mean quadratic error: 1.4 FTU). This shows that defining global empirical turbidity algorithms in tropical coastal waters is at reach.